PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0133s0025.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 155aa    MW: 16835.2 Da    PI: 10.4826
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0133s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.6e-184579135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk++
  Cagra.0133s0025.1.p 45 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 79
                         999*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.3873975IPR000679Zinc finger, GATA-type
SMARTSM004016.5E-143990IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-124184No hitNo description
Gene3DG3DSA:3.30.50.101.0E-144379IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.30E-134495No hitNo description
PROSITE patternPS0034404570IPR000679Zinc finger, GATA-type
PfamPF003203.4E-164579IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLDPTDKVIE SEAMKTSVDA IEEHSSSSSN SSGGGGTISN EKKSCAICGT SKTPLWRGGP  60
AGPKSLCNAC GIRNRKKRRT LISNRSEDKK TKNKKNQSRN PKLGDSLKQR LMELGREVMM  120
QRSTAEKQRR NKLGEEEQAA VLLMALSYAS SVYA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639261e-114AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
GenBankAY0845251e-114AY084525.1 Arabidopsis thaliana clone 110655 mRNA, complete sequence.
GenBankAY0912501e-114AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298741.14e-94hypothetical protein CARUB_v10014841mg
SwissprotQ8LG103e-88GAT15_ARATH; GATA transcription factor 15
TrEMBLR0HPE75e-94R0HPE7_9BRAS; Uncharacterized protein
STRINGAT3G06740.18e-86(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-87GATA transcription factor 15